- |||||||||| Journal: HEXIM1 inter-monomer autoinhibition governs 7SK RNA binding specificity and P-TEFb inactivation. (Pubmed Central) - Jan 16, 2026
This dual-site binding triggers a conformational rearrangement in Hexim1's disordered central region that unmasks the Cdk9-binding site, which is otherwise sequestered within an inter-monomer dimer interface. These findings reveal how Hexim autoinhibition dictates its specificity for 7SK RNA and prevents premature P-TEFb inhibition in the absence of 7SK, thereby providing a mechanistic understanding of Hexim/P-TEFb assembly into the 7SK RNP and further considerations for understanding Hexim-Tat competition during viral transcription.
- |||||||||| Journal: Rtf1-dependent transcriptional pausing regulates cardiogenesis. (Pubmed Central) - Jan 15, 2026
Intriguingly, attenuating pause release by pharmacological inhibition or morpholino targeting of CDK9 improved RNA Pol II occupancy at the transcription start sites of key cardiac genes and restored cardiomyocytes in Rtf1-deficient embryos. Thus, our findings demonstrate the crucial role that Rtf1-mediated transcriptional pausing plays in controlling the precise spatiotemporal transcription programs that govern early heart development.
- |||||||||| dinaciclib (MK-7965) / Merck (MSD), irinotecan / Generic mfg., vincristine / Generic mfg.
Journal, PARP Biomarker: Dinaciclib improves treatment response in chemoresistant hepatoblastoma. (Pubmed Central) - Jan 12, 2026 In our PDX model, treatment with VI?+?dinaciclib resulted in decreased tumor volume, viability and HB cell proliferation. Given these findings, combination treatment with VI and dinaciclib should be investigated further as a treatment for chemoresistant HB.
- |||||||||| Journal: CDK9 is a dependency in GATA-3 driven and MCL-1 independent T-cell Lymphomas. (Pubmed Central) - Jan 8, 2026
We also identify novel mechanisms by which GATA-3 and CDK9 regulate rRNA transcription and processing, respectively, collaboratively promoting ribosome biogenesis. Therefore, CDK9 is a therapeutic vulnerability across genetically and transcriptionally diverse T-cell lymphomas, including those for which GATA-3 is oncogenic.
- |||||||||| Journal: Disrupting CDK9 activity suppresses triple-negative breast cancer and is enhanced by EGFR Inhibition. (Pubmed Central) - Jan 8, 2026
In conclusion, the n-butanol fraction of Ardisia villosa displays potent anticancer activity, particularly in gastric cancer cells, through multi-targeted mechanisms involving cell cycle inhibition and senescence induction, and holds promise as a natural source for future anticancer therapeutics. Our results position CDK9 as a promising therapeutic target in TNBC, either alone or in combination with EGFR inhibition, provided that side effects associated with this combination treatment can be controlled.
- |||||||||| temozolomide / Generic mfg., zotiraciclib (TG02) / Cothera Biosci
Journal: Transcriptional condensates enrich phosphorylated PRMT2 to stimulate H3R8me2a deposition and hypoxic response in glioblastoma. (Pubmed Central) - Jan 7, 2026 Moreover, the combination of TG02 and temozolomide, the standard chemotherapy for GBM, significantly inhibits tumor progression in mouse xenograft models, an effect partially mediated by targeting PRMT2S12 phosphorylation. Our study uncovers the role of transcriptional condensation in enhancing PRMT activity, reveals a new mechanism for CDK9 inhibitors in modulating context-dependent transcriptional programs, and proposed a combinatorial therapeutic strategy against GBM.
- |||||||||| Journal, BRCA Biomarker: ZMYM3 S464: a potential phospho-regulatory hub in epigenetic remodeling and oncogenesis. (Pubmed Central) - Jan 6, 2026
ZMYM3 S464 emerges as a phospho-regulatory hub that coordinates epigenetic silencing, HR repair, and mitotic fidelity. Its cancer-type-specific upregulation offers a novel biomarker for HR-deficiency stratification and a therapeutic entry point for modulating BRCA1 function or epigenetic drug sensitivity; functional validation in HR-deficient models is now warranted.
- |||||||||| Journal: CDK11 activates CDK12 to trigger the elongation of RNA Polymerase II. (Pubmed Central) - Dec 11, 2025
Moreover, we find that CDK10 can partially compensate for the function of CDK11. Combining with earlier functional elucidation of CDK9 from us, the consequent roles of CDK7/8, CDK9, CDK10/11, and CDK12/13 in transcription regulation in metazoans are established.
- |||||||||| HDAC and CDK inhibitor combinations suppress neutrophil activation in myeloma () - Dec 5, 2025 - Abstract #ASH2025ASH_9452;
These transcriptional changes, accompanied by increased re-expression of tumor suppressors (e.g.,p16) and TGF?/SMAD signaling components, would predict reprogramming of an anti-inflammatory microenvironment by these combination treatments in myeloma. These findings point to a promising but underdeveloped therapeutic avenue whereby suppressing neutrophil-driven inflammation enhances anti-myeloma immunity.
- |||||||||| Review, Journal: Beyond Inhibition: Recent Advances of Heterobifunctional Molecules Targeting CDK9. (Pubmed Central) - Nov 13, 2025
Additionally, innovative approaches employing heterobifunctional molecules across various modalities have been extensively explored to target CDK9, expanding the therapeutic potential through multiple mechanisms. These advances hold promise for establishing a new paradigm in the treatment of transcriptionally addicted cancers.
- |||||||||| Nesprin-2 is upregulated in glioblastoma and contributes to tumor progression (Hawaii Convention Center, Kamehameha Exhibit Hall II & III) - Nov 5, 2025 - Abstract #WFNOS2025WFNOS_1388;
Compared to mice injected with control cells, both mice injected with either nesprin-2 knockdown cell lines exhibited reduced tumor growth and prolonged survival. These results show that nesprin-2 is a key factor in the progression of glioblastoma and suggest that the LINC complex may be a therapeutic target for the treatment of glioblastoma.
- |||||||||| temozolomide / Generic mfg.
Combination therapies with CDK9 inhibitors as a promising strategy to overcome therapy resistance in glioblastomas (Hawaii Convention Center, Kamehameha Exhibit Hall II & III) - Nov 5, 2025 - Abstract #WFNOS2025WFNOS_1306; A serendipitous finding was the increased expression of c-Myc upon CDK9 inhibitor treatment; while c-Myc increase did not appear to impede the efficacy of the CDK9 inhibitors, inclusion of a BRD4 inhibitor enhanced the sensitivity of the cells to the CDK9 inhibition. Ongoing studies include the use of temozolomide (TMZ)-resistant and sensitive DGCs and GSCs to identify specific drug-induced epigenetic modifications and elucidate the mechanisms by which CDK9 inhibition brings about its anti-tumor and neuroprotective effects, while overcoming therapy resistance.
- |||||||||| Membrane proteomic profiling to identify candidate therapy targets for glioblastoma infiltration (Hawaii Convention Center, Kamehameha Exhibit Hall II & III) - Nov 5, 2025 - Abstract #WFNOS2025WFNOS_379;
Furthermore, nine of these ubiquitously upregulated proteins were undetectable in astrocyte cells.Analysis of correlation between protein abundance ratio and survival time in GBM clinical samples retrieved from the CPTAC study on cBioPortal showed that ROBO1, LOXL1 and DYSF conferred a negative correlation with survival, which suggests that these membrane proteins could exhibit a functional role in GBM survival and progression.These findings suggest that targeting membrane proteins offers promise for developing effective GBM therapies predicated on the most clinically accurate intra-tumour region. Future work utilises molecular docking techniques to identify suitable repurposed drugs against the membrane proteins observed.
- |||||||||| Disruption of NEAT1-transcriptional network identifies targetable non-genetic dependencies in multiple myeloma (OCCC - West Halls B3-B4) - Nov 4, 2025 - Abstract #ASH2025ASH_4923;
In conclusion, our data demonstrated that NEAT1 contributes to overt phases of MM and to the clinicalaggressive behaviour of the disease, by orchestrating a mitotic transcriptional program. Furthermore,through the application of a multi-dimensional approach, we revealed that the dual inhibition of NEAT1and transcriptional regulators as CDK9 may offer a promising strategy for novel combinatorial anti-MMtherapies.
- |||||||||| Identifying novel 'druggable' targets via Npm1A-turboid fusion and mass spectrometry to overcome genetic or adaptive resistance to menin inhibitors in mtNPM1 AML (OCCC - West Halls B3-B4) - Nov 4, 2025 - Abstract #ASH2025ASH_2685;
Treatment with revumenib may also cause emergenceof hot spot mutations in menin (e.g., S160T, M327V, M327I, G331D, G331R, and T349M) exhibitingreduced affinity to MI-binding...OCI-AML3 MEN1-M327I cells were resistant toSNDX-50469, ziftomenib, and DS1594b, but sensitive to the second-generation MI, bleximenib, aspreviously reported.To identify novel 'druggable' targets in mtNpm1 AML cells either sensitive or resistant to MI, we knockedin TurboID by CRISPR/Cas9 into the C-terminus of the mtNpm1 gene in OCI-AML3 cells...When combined with a BET inhibitor (pelabresib) ora novel dual BET/HAT inhibitor (NEO2734/EP31670), both RocA and talazoparib induced synergisticlethality in the sensitive OCI-AML3 and OCI-AML2-Npm1A KI, as well as the MI-resistant (OCI-AML3-Menin-M327I or the OCI-AML3 MITR) cells...Exvivo treatment with EP31670 and RocA or talazoparib induced synergistic loss of viability in MI (SNDX-50469)-resistant, patient-derived (N = 3) mtNpm1 AML cells. In the PDX model of luciferized mtNpm1 +FLT3-ITD AML cells engrafted in NSG mice, compared to vehicle control, monotherapy with EP31670 (7.5mg/kg QD), talazoparib (0.25 mg/kg QD) or RocA (0.5 mg/kg 3x/wk) significantly reduced AML burden.Collectively, these findings highlight the newly discovered, preclinical efficacy of inhibitors of eIF4A andPARP against mtNpm1 AML cells and support the rationale for further evaluating the efficacy ofcombinations involving these agents.
- |||||||||| enzomenib (DSP-5336) / Sumitomo Pharma, Kyoto University
Preclinical activity of investigational menin inhibitor DSP-5336 (Enzomenib)-based combinations against MLL1-rearranged (MLL-r) or mutant-NPM1 AML models (OCCC - West Halls B3-B4) - Nov 4, 2025 - Abstract #ASH2025ASH_2682; Previously reported preclinical data showed that treatment with Menin inhibitor (MI),e.g., SNDX-5613 (revumenib) or KO-539 (ziftomenib), disrupts binding of Menin to MLL1/2 and MLL1-FP,leading to reduced MLL1/2 and MLL1-FP target gene expression, as well as induction of differentiationand apoptosis in AML cells expressing MLL-FP or mtNPM1c...Notably, in the cell lines and PD AML cells with MLLr ormtNPM1c AML, in vitro treatment with DSP-5336 in combination with CDK9 inhibitor (CDK9i) AZD4573 orBAY1251152 for 48 to 96 hours induced synergistic apoptosis or loss of viability, as discovered by the ZIPmethod with SynergyFinder...In vivo co-treatment with DSP-5336 and BAY1251152 showedsignificantly greater reduction in AML burden than treatment with each agent alone (p< 0.05), withoutinducing weight loss or other toxicities. These preclinical findings underscore the anti-AML activity of DSP-5336 and its molecular correlates, aswell as demonstrate synergistic in vitro and in vivo activity of DSP-5336-based combination with CDK9iagainst AML harboring MLL1-FP or mtNPM1c.
- |||||||||| lenalidomide / Generic mfg., thalidomide / Generic mfg., pomalidomide / Generic mfg.
Journal: Orthogonal IMiD-Degron Pairs Induce Selective Protein Degradation in Cells. (Pubmed Central) - Nov 2, 2025 In proof-of-concept studies, this system was applied to induce degradation of the optimum degron fused to CDK9, HPRT1, NanoLuc, or TRIM28. We anticipate that this system will be a valuable addition to the current arsenal of degron systems for use in target validation.
- |||||||||| Review, Journal: The 7SK snRNP complex: a critical regulator in carcinogenesis. (Pubmed Central) - Nov 1, 2025
Emerging evidence implicates 7SK snRNP deregulation in cancer progression. This review explores the intricate interplay between 7SK snRNP and CDK9, highlighting how disruptions in individual 7SK snRNP components drive transcriptional imbalances, amplify oncogenic programs, and promote a tumorigenic environment.
- |||||||||| OBP-004 / OncoBone Therapeutics
OBP-004, a novel small-molecule dual inhibitor of CDK9/13, reduces bone, brain, lung and lymph node metastases in vivo, with highest potency on bone metastases (Level 2' Exhibit Hall D; In-Person Only) - Oct 13, 2025 - Abstract #AACRNCIEORTC2025AACR_NCI_EORTC_284; Available on Wednesday, October 22, 2025 at 01:00pm EDT. Available on Wednesday, October 22, 2025 at 01:00pm EDT.
- |||||||||| Integrative multiomic analysis identifies EIF4A1 and CDK9 as key therapeutic targets in oligodendrogliomas (Forum Hall Foyer 3) - Oct 12, 2025 - Abstract #EANO2025EANO_796;
Our multiomic study provides a comprehensive molecular and clinical landscape of oligodendrogliomas and reveals that targeting the regulation of transcription and translation initiation could improve the prognosis of oligodendroglioma. CDK9 and EIF4A inhibitors, currently evaluated in clinical trials for other cancers, represent attractive new therapeutic targets for aggressive oligodendrogliomas.
- |||||||||| Journal, PD(L)-1 Biomarker, IO biomarker: GBP1-CDK9-STAT3 signaling axis promotes osteosarcoma PD-L1 expression and immune escape. (Pubmed Central) - Oct 11, 2025
Specifically, our results reveal that GBP1 regulates PD-L1 expression by activating CDK9 and promoting STAT3 phosphorylation. These findings suggest that targeting GBP1 may represent a promising therapeutic strategy for the treatment of osteosarcoma by impairing tumor immune evasion.
- |||||||||| Journal: Targeting CDK9 with Molegro Virtual Docker. (Pubmed Central) - Oct 11, 2025
The necessary inputs are binding affinity data available in BindingDB and the atomic coordinates of the target found in the protein data bank. All CDK9 datasets and Jupyter Notebooks discussed in this work are available at GitHub: https://github.com/azevedolab/docking#readme .
- |||||||||| A scalable, proteome-wide protein profiling platform with absolute quantification of 1000 proteins (Poster Hall (Exhibit Halls AB); Virtual) - Oct 3, 2025 - Abstract #SITC2025SITC_1495;
They simultaneously resulted in increased secretion of chemokines CXCL2, CXCL3, CXCL5, and maintained CCL2 and IL-8 expression, possibly promoting additional immune involvement parallel to direct cell killing. These findings underscore Omni 1000's capacity to profile functional heterogeneity in tumor immune microenvironments and support development of precision medicine with immunotherapeutic potential.Conclusions Together, we demonstrate a novel 1000-plex solution, Omni 1000, with content balancing critical targets and biological breadth, and demonstrated real-world utility in early detection of disease and high throughput cancer drug development.
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